Matthias Futschik

Performance of antigen lateral flow devices in the UK during the alpha, delta, and omicron waves of the SARS-CoV-2 pandemic: a diagnostic and observational study

David W Eyre; Matthias Futschik; Sarah Tunkel; Jia Wei; Joanna Cole-Hamilton; Rida Saquib; Nick Germanacos; et al, The Lancet Infectious Diseases. 2023. http://dx.doi.org/10.1016/s1473-3099(23)00129-9 . 10.1016/s1473-3099(23)00129-9 . The Lancet Infectious Diseases

Loss of H3K9 trimethylation alters chromosome compaction and transcription factor retention during mitosis

Dounia Djeghloul; Andrew Dimond; Sherry Cheriyamkunnel; Holger Kramer; Bhavik Patel; Karen Brown; Alex Montoya; et al, Nature Structural & Molecular Biology. 489 - 501. 4. 30. 2023. http://dx.doi.org/10.1038/s41594-023-00943-7 . 10.1038/s41594-023-00943-7 . Nature Structural & Molecular Biology

Integration of Stemness Gene Signatures Reveals Core Functional Modules of Stem Cells and Potential Novel Stemness Genes

Tânia Barata; Isabel Duarte; Matthias E. Futschik, Genes. 745 - 745. 3. 14. 2023. http://dx.doi.org/10.3390/genes14030745 . 10.3390/genes14030745 . Genes

CCBE1 Is Essential for Epicardial Function during Myocardium Development

Fernando Bonet; Sabrina Brito Añez; José Manuel Inácio; Matthias E. Futschik; José Antonio Belo, International Journal of Molecular Sciences. 2022. https://doi.org/10.3390/ijms232012642 . 10.3390/ijms232012642 . International Journal of Molecular Sciences

Genome-wide associations of aortic distensibility suggest causality for aortic aneurysms and brain white matter hyperintensities.

Matthias Futschik; Catherine Francis; Futschik ME; Jian Huang; Wenjia Bai; Sargurupremraj M; Alexander Teumer; et al, Nature communications. 2022. https://europepmc.org/articles/PMC9349177 . 10.1038/s41467-022-32219-x . Nature communications

MicroRNA-100-5p and microRNA-298-5p released from apoptotic cortical neurons are endogenous Toll-like receptor 7/8 ligands that contribute to neurodegeneration

Wallach, T.; Mossmann, Z.J.; Szczepek, M.; Wetzel, M.; Machado, R.; Raden, M.; Miladi, M.; et al, Molecular Neurodegeneration. 1. 16. 2021. http://www.scopus.com/inward/record.url?eid=2-s2.0-85120033204&partnerID=MN8TOARS . 10.1186/s13024-021-00498-5 . Molecular Neurodegeneration

Detection of novel potential regulators of stem cell differentiation and cardiogenesis through combined genome-wide profiling of protein-coding transcripts and microRNAs

Machado, R.; Sachinidis, A.; Futschik, M.E., Cells. 9. 10. 2021. http://www.scopus.com/inward/record.url?eid=2-s2.0-85115889476&partnerID=MN8TOARS . 10.3390/cells10092477 . Cells

DAND5 Inactivation Enhances Cardiac Differentiation in Mouse Embryonic Stem Cells

Inácio, J.M.; von Gilsa Lopes, J.; Silva, A.M.; Cristo, F.; Marques, S.; Futschik, M.E.; Belo, J.A., Frontiers in Cell and Developmental Biology. 9. 2021. http://www.scopus.com/inward/record.url?eid=2-s2.0-85104990479&partnerID=MN8TOARS . 10.3389/fcell.2021.629430 . Frontiers in Cell and Developmental Biology

The gene regulation knowledge commons: the action area of GREEKC.

Biochimica et biophysica acta. Gene regulatory mechanisms. 2021. https://doi.org/10.1016/j.bbagrm.2021.194768 . 10.1016/j.bbagrm.2021.194768 . Biochimica et biophysica acta. Gene regulatory mechanisms

Genome-wide identification and characterization of Fur-binding sites in the cyanobacteria Synechocystis sp. PCC 6803 and PCC 6714

Riediger, M.; Hernández-Prieto, M.A.; Song, K.; Hess, W.R.; Futschik, M.E., DNA Research. 6. 28. 2021. http://www.scopus.com/inward/record.url?eid=2-s2.0-85121277695&partnerID=MN8TOARS . 10.1093/dnares/dsab023 . DNA Research

Integration and Comparison of Transcriptomic and Proteomic Data for Meningioma

Jemma Dunn; Vasileios P. Lenis; David A. Hilton; Rolf Warta; Christel Herold-Mende; C. Oliver Hanemann; Futschik, Matthias, Cancers. 11. 12. 2020. https://doi.org/10.3390/cancers12113270 . 10.3390/cancers12113270 . published Cancers

Depletion of the FtsH1/3 Proteolytic Complex Suppresses the Nutrient Stress Response in the Cyanobacterium Synechocystis sp strain PCC 6803

Vendula Krynická; Jens Georg; Philip J. Jackson; Mark J. Dickman; C. Neil Hunter; Futschik, Matthias; Wolfgang R. Hess; Josef Komenda, The Plant Cell. 2912 - 2928. 12. 31. 2019. https://doi.org/10.1105/tpc.19.00411 . 10.1105/tpc.19.00411 . published The Plant Cell

Exogenous WNT5A and WNT11 proteins rescue CITED2 dysfunction in mouse embryonic stem cells and zebrafish morphants

Santos, João; Mendes-Silva, Leonardo; Afonso, Vanessa; Martins, Gil; Machado, Rui; Lopes, Joao; Cancela, M. Leonor; et al, Cell Death & Disease. 10. 2019. https://www.nature.com/articles/s41419-019-1816-6 . 10.1038/s41419-019-1816-6 . published Cell Death & Disease

ChIP-seq Experiment and Data Analysis in the Cyanobacterium Synechocystis sp. PCC 6803

Giner-Lamia, Joaquín; Hernández-Prieto, Miguel; Futschik, Matthias, BIO-PROTOCOL. 12. 8. 2018. http://dx.doi.org/10.21769/bioprotoc.2895 . 10.21769/bioprotoc.2895 . published BIO-PROTOCOL

Parallel Genome-wide Profiling of Coding and Non-coding RNAs to Identify Novel Regulatory Elements in Embryonic and Maturated Heart

Sabour, D.; Machado, R.S.R.; Pinto, J.P.; Rohani, S.; Sahito, R.G.A.; Hescheler, J.; Futschik, Matthias; Sachinidis, A., Molecular Therapy - Nucleic Acids. 158 - 173. 12. 2018. https://doi.org/10.1016/j.omtn.2018.04.018 . 10.1016/j.omtn.2018.04.018 . published Molecular Therapy - Nucleic Acids

FoxN1-dependent thymic epithelial cells promote T-cell leukemia development

Ghezzo, M.N.; Fernandes, M.T.; Pacheco-Leyva, I.; Rodrigues, P.M.; Machado, R.S.; Araújo, M.A.S.; Kalathur, R.K.; et al, Carcinogenesis. 1463 - 1476. 12. 39. 2018. https://doi.org/10.1093/carcin/bgy127 . 10.1093/carcin/bgy127 . published Carcinogenesis

Proteomic analysis discovers the differential expression of novel proteins and phosphoproteins in meningioma including NEK9, HK2 and SET and deregulation of RNA metabolism

Dunn, J.; Ferluga, S.; Sharma, V.; Futschik, Matthias; Hilton, D.A.; Adams, C.L.; Lasonder, E.; Oliver Hanemann, C., EBioMedicine. 77 - 91. 40. 2018. https://www.thelancet.com/journals/ebiom/article/PIIS2352-3964(18)30625-X/fulltext . 10.1016/j.ebiom.2018.12.048 . published EBioMedicine

StemMapper: A curated gene expression database for stem cell lineage analysis

Pinto, J.P.; MacHado, R.S.R.; Magno, R.; Oliveira, D.V.; MacHado, S.; Andrade, R.P.; Braganca, J.; Duarte, I.; Futschik, Matthias, Nucleic Acids Research. D788 - D793. D1. 46. 2018. https://doi.org/10.1093/nar/gkx921 . 10.1093/nar/gkx921 . published Nucleic Acids Research

Glycerol positive promoters for tailored metabolic engineering of the yeast Saccharomyces cerevisiae

Ho, P.-W.; Klein, M.; Futschik, Matthias; Nevoigt, E., FEMS Yeast Research. 3. 18. 2018. https://doi.org/10.1093/femsyr/foy019 . 10.1093/femsyr/foy019 . published FEMS Yeast Research

Membrane-enriched proteome changes and prion protein expression during neural differentiation and in neuroblastoma cells

Macedo, J.A.; Schrama, D.; Duarte, I.; Tavares, E.; Renaut, J.; Futschik, Matthias; Rodrigues, P.M.; Melo, E.P., BMC Genomics. 1. 18. 2017. https://doi.org/10.1186/s12864-017-3694-6 . 10.1186/s12864-017-3694-6 . published BMC Genomics

Acclimation of Oxygenic Photosynthesis to Iron Starvation Is Controlled by the sRNA IsaR1

Georg, J.; Kostova, G.; Vuorijoki, L.; Schön, V.; Kadowaki, T.; Huokko, T.; Baumgartner, D.; et al, Current Biology. 1425 - 1436.e7. 10. 27. 2017. https://doi.org/10.1016/j.cub.2017.04.010 . 10.1016/j.cub.2017.04.010 . published Current Biology

HDNetDB: A Molecular Interaction Database for Network-Oriented Investigations into Huntington's Disease

Kalathur, R.K.R.; Pedro Pinto, J.; Sahoo, B.; Chaurasia, G.; Futschik, Matthias, Scientific Reports. 1. 7. 2017. https://doi.org/10.1038/s41598-017-05224-0 . 10.1038/s41598-017-05224-0 . published Scientific Reports

Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803

Giner-Lamia, J.; Robles-Rengel, R.; Hernández-Prieto, M.A.; Isabel Muro-Pastor, M.; Florencio, F.J.; Futschik, Matthias, Nucleic Acids Research. 11800 - 11820. 20. 45. 2017. https://doi.org/10.1093/nar/gkx860 . 10.1093/nar/gkx860 . published Nucleic Acids Research

Extracellular Proteins: Novel Key Components of Metal Resistance in Cyanobacteria?

Giner-Lamia, Joaquín; Pereira, Sara B.; Bovea-Marco, Miquel; Futschik, Matthias; Tamagnini, Paula; Oliveira, Paulo, Frontiers in Microbiology. 7. 2016. http://dx.doi.org/10.3389/fmicb.2016.00878 . 10.3389/fmicb.2016.00878 . published Frontiers in Microbiology

The Transcriptional Landscape of the Photosynthetic Model Cyanobacterium Synechocystis sp. PCC6803

Hernández-Prieto, Miguel A.; Semeniuk, Trudi Ann; Giner-Lamia, Joaquín; Futschik, Matthias, Scientific Reports. 1. 6. 2016. http://dx.doi.org/10.1038/srep22168 . 10.1038/srep22168 . published Scientific Reports

The unfolded protein response and its potential role in Huntington's disease elucidated by a systems biology approach

Kalathur, Ravi Kiran Reddy; Giner-Lamia, Joaquin; Machado, Susana; Barata, Tania; Ayasolla, Kameshwar R S; Futschik, Matthias; Kalathur RK; et al, F1000Research. 4. 2016. http://dx.doi.org/10.12688/f1000research.6358.2 . 10.12688/f1000research.6358.2 . published F1000Research

Transcriptome dynamics of a broad host-range cyanophage and its hosts

Doron, Shany; Fedida, Ayalla; Hernández-Prieto, Miguel A; Sabehi, Gazalah; Karunker, Iris; Stazic, Damir; Feingersch, Roi; et al, The ISME Journal. 1437 - 1455. 6. 10. 2015. http://dx.doi.org/10.1038/ismej.2015.210 . 10.1038/ismej.2015.210 . published The ISME Journal

Identification of novel biomarkers in chronic immune thrombocytopenia (ITP) by microarray-based serum protein profiling

Bal, Gürkan; Futschik, Matthias; Hartl, Daniela; Ringel, Frauke; Kamhieh-Milz, Julian; Sterzer, Viktor; Hoheisel, Jörg D.; Alhamdani, Mohamed S. S.; Salama, Abdulgabar, British Journal of Haematology. 602 - 615. 4. 172. 2015. http://dx.doi.org/10.1111/bjh.13861 . 10.1111/bjh.13861 . published British Journal of Haematology

Novel Human Embryonic Stem Cell Regulators Identified by Conserved and Distinct CpG Island Methylation State

Pells, Steve; Koutsouraki, Eirini; Morfopoulou, Sofia; Valencia-Cadavid, Sara; Tomlinson, Simon R.; Kalathur, Ravi; Futschik, Matthias E.; De Sousa, Paul A., PLOS ONE. 7. 10. 2015. http://dx.doi.org/10.1371/journal.pone.0131102 . 10.1371/journal.pone.0131102 . PLOS ONE

StemChecker: a web-based tool to discover and explore stemness signatures in gene sets.

Pinto JP; Kalathur RK; Oliveira DV; Barata T; Machado RS; Machado S; Pacheco-Leyva I; Duarte I; Futschik ME, 2015. http://europepmc.org/abstract/med/26007653 . 10.1093/nar/gkv529 .

Systematic interaction network filtering identifies CRMP1 as a novel suppressor of huntingtin misfolding and neurotoxicity

Stroedicke, Martin; Bounab, Yacine; Strempel, Nadine; Klockmeier, Konrad; Yigit, Sargon; Friedrich, Ralf P.; Chaurasia, Gautam; et al, Genome Research. 701 - 713. 5. 25. 2015. http://dx.doi.org/10.1101/gr.182444.114 . 10.1101/gr.182444.114 . published Genome Research

TRIB2 as a biomarker for diagnosis and progression of melanoma

Hill, Richard; Kalathur, Ravi Kiran Reddy; Colaço, Laura; Brandão, Ricardo; Ugurel, Selma; Futschik, Matthias; Link, Wolfgang, Carcinogenesis. 469 - 477. 4. 36. 2015. http://dx.doi.org/10.1093/carcin/bgv002 . 10.1093/carcin/bgv002 . published Carcinogenesis

Differentially Expressed MicroRNAs in Maternal Plasma for the Noninvasive Prenatal Diagnosis of Down Syndrome (Trisomy 21)

Julian Kamhieh-Milz; Reham Fadl Hassan Moftah; Gürkan Bal; Futschik, Matthias; Viktor Sterzer; Omid Khorramshahi; Martin Burow; et al, BioMed Research International. 1 - 9. 2014. 2014. http://dx.doi.org/10.1155/2014/402475 . 10.1155/2014/402475 . published BioMed Research International

Targeting molecular networks for drug research

Pinto, J.P.; Machado, R.S.R.; Xavier, J.M.; Futschik, M.E., Frontiers in Genetics. JUN. 5. 2014. http://www.scopus.com/inward/record.url?eid=2-s2.0-84906249332&partnerID=MN8TOARS . 10.3389/fgene.2014.00160 . Frontiers in Genetics

A novel phosphatidylinositol 3-kinase (PI3K) inhibitor directs a potent FOXO-dependent, p53-independent cell cycle arrest phenotype characterized by the differential induction of a subset of FOXO-regulated genes

Hill, Richard; Kalathur, Ravi Kiran Reddy; Callejas, Sergio; Colaço, Laura; Brandão, Ricardo; Serelde, Beatriz; Cebriá, Antonio; et al, Breast Cancer Research. 6. 16. 2014. http://dx.doi.org/10.1186/s13058-014-0482-y . 10.1186/s13058-014-0482-y . published Breast Cancer Research

UniHI 7: An enhanced database for retrieval and interactive analysis of human molecular interaction networks

Kalathur, R.K.R.; Pinto, J.P.; Hernández-Prieto, M.A.; MacHado, R.S.R.; Almeida, D.; Chaurasia, G.; Futschik, M.E., Nucleic Acids Research. D1. 42. 2014. http://www.scopus.com/inward/record.url?eid=2-s2.0-84891763323&partnerID=MN8TOARS . 10.1093/nar/gkt1100 . Nucleic Acids Research

Toward a systems-level understanding of gene regulatory, protein interaction, and metabolic networks in cyanobacteria

Hernández-Prieto, M.A.; Semeniuk, T.A.; Futschik, M.E., Frontiers in Genetics. JUL. 5. 2014. http://www.scopus.com/inward/record.url?eid=2-s2.0-84906266629&partnerID=MN8TOARS . 10.3389/fgene.2014.00191 . Frontiers in Genetics

StemCellNet: An interactive platform for network-oriented investigations in stem cell biology

Pinto, J.P.; Reddy Kalathur, R.K.; Machado, R.S.R.; Xavier, J.M.; Bragança, J.; Futschik, M.E., Nucleic Acids Research. W1. 42. 2014. http://www.scopus.com/inward/record.url?eid=2-s2.0-84904816435&partnerID=MN8TOARS . 10.1093/nar/gku455 . Nucleic Acids Research

Dynamic Circadian Protein-Protein Interaction Networks Predict Temporal Organization of Cellular Functions

Wallach, T.; Schellenberg, K.; Maier, B.; Kalathur, R.K.R.; Porras, P.; Wanker, E.E.; Futschik, M.E.; Kramer, A., PLoS Genetics. 3. 9. 2013. http://www.scopus.com/inward/record.url?eid=2-s2.0-84875967429&partnerID=MN8TOARS . 10.1371/journal.pgen.1003398 . PLoS Genetics

Transcriptional profiling of the hematopoietic support of interleukin-stimulated human umbilical vein endothelial cells (HUVECs)

Bal, G.; Kamhieh-Milz, J.; Futschik, M.; Häupl, T.; Salama, A.; Moldenhauer, A., Cell Transplantation. 251 - 267. 1. 21. 2012. http://www.scopus.com/inward/record.url?eid=2-s2.0-84858143659&partnerID=MN8TOARS . 10.3727/096368911X580581 . Cell Transplantation

Huntington's Disease and its therapeutic target genes: a global functional profile based on the HD Research Crossroads database

Kalathur, Ravi Kiran Reddy; Hernández-Prieto, Miguel A; Futschik, Matthias E, BMC Neurology. 1. 12. 2012. http://dx.doi.org/10.1186/1471-2377-12-47 . 10.1186/1471-2377-12-47 . published BMC Neurology

A Systems Biology Approach towards Deciphering the Unfolded Protein Response in Huntington's Disease

Ayasolla, Kameshwar; Kalathur, Ravi; Futschik, Matthias, Nature Precedings. 2012. http://dx.doi.org/10.1038/npre.2012.7078.1 . 10.1038/npre.2012.7078.1 . published Nature Precedings

The Unfolded Protein Response and its potential role in Huntington's disease

Kalathur, Ravi; Ayasolla, Kamesh; Futschik, Matthias, Nature Precedings. 2012. http://dx.doi.org/10.1038/npre.2012.7145.1 . 10.1038/npre.2012.7145.1 . published Nature Precedings

Iron Deprivation in Synechocystis: Inference of Pathways, Non-coding RNAs, and Regulatory Elements from Comprehensive Expression Profiling

Hernández-Prieto, Miguel A.; Schön, Verena; Georg, Jens; Barreira, Luísa; Varela, João; Hess, Wolfgang R.; Futschik, Matthias E., G3 Genes|Genomes|Genetics. 1475 - 1495. 12. 2. 2012. http://dx.doi.org/10.1534/g3.112.003863 . 10.1534/g3.112.003863 . published G3 Genes|Genomes|Genetics

Transcriptional Profiling of the Hematopoietic Support of Interleukin-Stimulated Human Umbilical Vein Endothelial Cells (HUVECs)

Bal, Gürkan; Kamhieh-Milz, Julian; Futschik, Matthias; Häupl, Thomas; Salama, Abdulgabar; Moldenhauer, Anja, Cell Transplantation. 251 - 267. 1. 21. 2012. http://dx.doi.org/10.3727/096368911x580581 . 10.3727/096368911x580581 . published Cell Transplantation

CyanoEXpress: A web database for exploration and visualisation of the integrated transcriptome of cyanobacterium Synechocystis sp. PCC6803

Hernandez-Prieto, Miguel A; Futschik, Matthias, Bioinformation. 634 - 638. 13. 8. 2012. http://dx.doi.org/10.6026/97320630008634 . 10.6026/97320630008634 . Bioinformation

Interleukin 32 promotes hematopoietic progenitor expansion and attenuates bone marrow cytotoxicity

Moldenhauer, Anja; Futschik, Matthias; Lu, Huili; Helmig, Melanie; Götze, Patricc; Bal, Gürkan; Zenke, Martin; Han, Wei; Salama, Abdulgabar, European Journal of Immunology. 1774 - 1786. 6. 41. 2011. http://dx.doi.org/10.1002/eji.201040986 . 10.1002/eji.201040986 . published European Journal of Immunology

Identification of Sc-type ILV6 as a target to reduce diacetyl formation in lager brewers' yeast

Duong, C.T.; Strack, L.; Futschik, M.; Katou, Y.; Nakao, Y.; Fujimura, T.; Shirahige, K.; Kodama, Y.; Nevoigt, E., Metabolic Engineering. 638 - 647. 6. 13. 2011. http://dx.doi.org/10.1016/j.ymben.2011.07.005 . 10.1016/j.ymben.2011.07.005 . published Metabolic Engineering

Inferring modules from human protein interactome classes

Marras, Elisabetta; Travaglione, Antonella; Chaurasia, Gautam; Futschik, Matthias; Capobianco, Enrico, BMC Systems Biology. 1. 4. 2010. http://dx.doi.org/10.1186/1752-0509-4-102 . 10.1186/1752-0509-4-102 . published BMC Systems Biology

Comparison and consolidation of microarray data sets of human tissue expression

Russ, Jenny; Futschik, Matthias E, BMC Genomics. 1. 11. 2010. http://dx.doi.org/10.1186/1471-2164-11-305 . 10.1186/1471-2164-11-305 . published BMC Genomics

Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus

Steglich, Claudia; Lindell, Debbie; Futschik, Matthias; Rector, Trent; Steen, Robert; Chisholm, Sallie W, Genome Biology. 5. 11. 2010. http://dx.doi.org/10.1186/gb-2010-11-5-r54 . 10.1186/gb-2010-11-5-r54 . published Genome Biology

Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus

Zinser, E.R.; Lindell, D.; Johnson, Z.I.; Futschik, M.E.; Steglich, C.; Coleman, M.L.; Wright, M.A.; et al, PLoS ONE. 4. 4. 2009. http://www.scopus.com/inward/record.url?eid=2-s2.0-65249154859&partnerID=MN8TOARS . 10.1371/journal.pone.0005135 . PLoS ONE

UniHI 4: New tools for query, analysis and visualization of the human protein-protein interactome

Chaurasia, G.; Malhotra, S.; Russ, J.; Schnoegl, S.; Hänig, C.; Wanker, E.E.; Futschik, M.E., Nucleic Acids Research. SUPPL. 1. 37. 2009. http://www.scopus.com/inward/record.url?eid=2-s2.0-58149183692&partnerID=MN8TOARS . 10.1093/nar/gkn841 . Nucleic Acids Research

Tight Regulation of Unstructured Proteins: From Transcript Synthesis to Protein Degradation

Gsponer, J.; Futschik, M. E.; Teichmann, S. A.; Babu, M. M., Science. 1365 - 1368. 5906. 322. 2008. http://dx.doi.org/10.1126/science.1163581 . 10.1126/science.1163581 . published Science

Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis

Futschik, M.E.; Herzel, H., Bioinformatics. 1063 - 1069. 8. 24. 2008. http://www.scopus.com/inward/record.url?eid=2-s2.0-41949124936&partnerID=MN8TOARS . 10.1093/bioinformatics/btn072 . Bioinformatics

The challenge of regulation in a minimal photoautotroph: Non-coding RNAs in Prochlorococcus

Steglich, C.; Futschik, M.E.; Lindell, D.; Voss, B.; Chisholm, S.W.; Hess, W.R., PLoS Genetics. 8. 4. 2008. http://www.scopus.com/inward/record.url?eid=2-s2.0-50849096398&partnerID=MN8TOARS . 10.1371/journal.pgen.1000173 . PLoS Genetics

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution

Lindell, Debbie; Jaffe, Jacob D.; Coleman, Maureen L.; Futschik, Matthias E.; Axmann, Ilka M.; Rector, Trent; Kettler, Gregory; et al, Nature. 83 - 86. 7158. 449. 2007. http://dx.doi.org/10.1038/nature06130 . 10.1038/nature06130 . published Nature

Graph-theoretical comparison reveals structural divergence of human protein interaction networks.

Futschik ME; Tschaut A; Chaurasia G; Herzel H, 2007. http://europepmc.org/abstract/med/18546482 .

Comparison of human protein-protein interaction maps

Futschik, M.E.; Chaurasia, G.; Herzel, H., Bioinformatics. 605 - 611. 5. 23. 2007. http://www.scopus.com/inward/record.url?eid=2-s2.0-34047168855&partnerID=MN8TOARS . 10.1093/bioinformatics/btl683 . Bioinformatics

UniHI: An entry gate to the human protein interactome

Chaurasia, G.; Iqbal, Y.; Hänig, C.; Herzel, H.; Wanker, E.E.; Futschik, M.E., Nucleic Acids Research. SUPPL. 1. 35. 2007. http://www.scopus.com/inward/record.url?eid=2-s2.0-33846048729&partnerID=MN8TOARS . 10.1093/nar/gkl817 . Nucleic Acids Research

Functional and Transcriptional Coherency of Modules in the Human Protein Interaction Network

Futschik, Matthias E.; Chaurasia, Gautam; Tschaut, Anna; Russ, Jenny; Babu, M. Madan; Herzel, Hanspeter, Journal of Integrative Bioinformatics. 198 - 207. 3. 4. 2007. http://dx.doi.org/10.1515/jib-2007-76 . 10.1515/jib-2007-76 . accepted Journal of Integrative Bioinformatics

Flexible web-based integration of distributed large-scale human protein interaction maps

Chaurasia, Gautam; Iqbal, Yasir; Hänig, Christian; Herzel, Hanspeter; Wanker, Erich E.; Futschik, Matthias E., Journal of Integrative Bioinformatics. 40 - 50. 1. 4. 2007. http://dx.doi.org/10.1515/jib-2007-51 . 10.1515/jib-2007-51 . published Journal of Integrative Bioinformatics

Genome-Wide Analysis of Light Sensing in Prochlorococcus

Steglich, Claudia; Futschik, Matthias; Rector, Trent; Steen, Robert; Chisholm, Sallie W.; Steglich C; Futschik M; et al, Journal of Bacteriology. 7796 - 7806. 22. 188. 2006. http://dx.doi.org/10.1128/jb.01097-06 . 10.1128/jb.01097-06 . published Journal of Bacteriology

DNA motifs and sequence periodicities.

Kumar L; Futschik M; Herzel H, In Silico Biology. 71 - 78. 1-2. 6. 2006. https://pubmed.ncbi.nlm.nih.gov/16789915/ . published In Silico Biology

OLIN: Optimized normalization, visualization and quality testing of two-channel microarray data

Futschik, M.E.; Crompton, T., Bioinformatics. 1724 - 1726. 8. 21. 2005. http://www.scopus.com/inward/record.url?eid=2-s2.0-17444399363&partnerID=MN8TOARS . 10.1093/bioinformatics/bti199 . Bioinformatics

NOISE-ROBUST SOFT CLUSTERING OF GENE EXPRESSION TIME-COURSE DATA

FUTSCHIK, MATTHIAS E.; CARLISLE, BRONWYN, Journal of Bioinformatics and Computational Biology. 965 - 988. 04. 03. 2005. http://dx.doi.org/10.1142/s0219720005001375 . 10.1142/s0219720005001375 . published Journal of Bioinformatics and Computational Biology

Model selection and efficiency testing for normalization of cDNA microarray data.

Futschik, M.; Crompton, T., Genome biology. 8. 5. 2004. http://www.scopus.com/inward/record.url?eid=2-s2.0-16644384356&partnerID=MN8TOARS . 10.1186/gb-2004-5-8-r60 . Genome biology

Evolving connectionist systems for knowledge discovery from gene expression data of cancer tissue

Futschik, Matthias E; Reeve, Anthony; Kasabov, Nikola; Futschik, M.E.; Reeve, A.; Kasabov, N., Artificial Intelligence in Medicine. 165 - 189. 2. 28. 2003. http://dx.doi.org/10.1016/s0933-3657(03)00063-0 . 10.1016/s0933-3657(03)00063-0 . published Artificial Intelligence in Medicine

Prediction of clinical behaviour and treatment for cancers.

Futschik ME; Sullivan M; Reeve A; Kasabov N, OMJ Applied Bioinformatics . S53 - 58. 3. 2. 2003. http://europepmc.org/abstract/med/15130817 . published OMJ Applied Bioinformatics

Association of CDH1 haplotypes with susceptibility to sporadic diffuse gastric cancer

Humar, Bostjan; Graziano, Francesco; Cascinu, Stefano; Catalano, Vincenzo; Ruzzo, Anna M; Magnani, Mauro; Toro, Tumi; et al, Oncogene. 8192 - 8195. 53. 21. 2002. http://dx.doi.org/10.1038/sj.onc.1205921 . 10.1038/sj.onc.1205921 . published Oncogene

Gene Expression Profiling of Metastatic and Nonmetastatic Colorectal Cancer Cell Lines

Futschik, Matthias; Jeffs, Aaron; Pattison, Sharon; Kasabov, Nikola; Sullivan, Michael; Merrie, Arend; Reeve, Anthony, Genome Letters. 26 - 34. 1. 1. 2002. http://dx.doi.org/10.1166/gl.2002.005 . 10.1166/gl.2002.005 . published Genome Letters