Publications
Information about journal articles, updated at 01-12-2024, from platform CIÊNCIAVITAE.
Pillars of theoretical biology: "Biochemical systems analysis, I, II and III"
Armindo Salvador, Journal of Theoretical Biology. 576. 2024. https://doi.org/10.1016/j.jtbi.2023.111655 . 10.1016/j.jtbi.2023.111655 . published Journal of Theoretical Biology
The architecture of redox microdomains: Cascading gradients and peroxiredoxins' redox-oligomeric coupling integrate redox signaling and antioxidant protection
Matthew Griffith; Adérito Araújo; Rui Travasso; Armindo Salvador, Redox Biology. 69. 2023. https://doi.org/10.1016/j.redox.2023.103000 . 10.1016/j.redox.2023.103000 . published Redox Biology
The mammalian peroxisomal membrane is permeable to both GSH and GSSG - Implications for intraperoxisomal redox homeostasis
Ferreira, Maria J.; Rodrigues, Tony A.; Pedrosa, Ana G.; Gales, Luís; Salvador, Armindo; Francisco, Tânia; Azevedo, Jorge E., Redox Biology. 63. 2023. http://dx.doi.org/10.1016/j.redox.2023.102764 . 10.1016/j.redox.2023.102764 . published Redox Biology
Ligand's Partition to the Lipid Bilayer Should Be Accounted for When Estimating Their Affinity to Proteins
Moreno, Maria João; Salvador, Armindo, Molecules. 7. 28. 2023. http://dx.doi.org/10.3390/molecules28073136 . 10.3390/molecules28073136 . Molecules
How abundant are superoxide and hydrogen peroxide in the vasculature lumen, how far can they reach?
Tânia Sousa; Marcos Gouveia; Rui D.M. Travasso; Armindo Salvador, Redox Biology. 2022. https://doi.org/10.1016/j.redox.2022.102527 . 10.1016/j.redox.2022.102527 . published Redox Biology
Analysis of the Equilibrium Distribution of Ligands in Heterogeneous Media: Approaches and Pitfalls
Maria João Moreno; Luís M. S. Loura; Jorge Martins; Armindo Salvador; Adrian Velazquez-Campoy, International Journal of Molecular Sciences. 17. 23. 2022. https://doi.org/10.3390/ijms23179757 . 10.3390/ijms23179757 . published International Journal of Molecular Sciences
Modeling Gd<sup>3+</sup> Complexes for Molecular Dynamics Simulations: Toward a Rational Optimization of MRI Contrast Agents
Oliveira, Alexandre C.; Filipe, Hugo A. L.; Ramalho, João P. Prates; Salvador, Armindo; Geraldes, Carlos F. G. C.; Moreno, Maria João; Loura, Luís M. S., Inorganic Chemistry. 2022. http://dx.doi.org/10.1021/acs.inorgchem.2c01597 . 10.1021/acs.inorgchem.2c01597 . Inorganic Chemistry
Glucose-6-Phosphate Dehydrogenase Deficiency and Neonatal Hyperbilirubinemia: Insights on Pathophysiology, Diagnosis, and Gene Variants in Disease Heterogeneity
Lee, Heng Yang; Ithnin, Azlin; Azma, Raja Zahrathul; Othman, Ainoon; Salvador, Armindo; Cheah, Fook Choe, Frontiers in Pediatrics. 10. 2022. http://dx.doi.org/10.3389/fped.2022.875877 . 10.3389/fped.2022.875877 . published Frontiers in Pediatrics
Calculation of Permeability Coefficients from Solute Equilibration Dynamics: An Assessment of Various Methods
Margarida M. Cordeiro; Armindo Salvador; Maria João Moreno, Membranes. 254 - 254. 3. 12. 2022. https://doi.org/10.3390/membranes12030254 . 10.3390/membranes12030254 . Membranes
In vivo hydrogen peroxide diffusivity in brain tissue supports volume signaling activity
A. Ledo; E. Fernandes; A. Salvador; J. Laranjinha; R.M. Barbosa, Redox Biology. 50. 2022. https://doi.org/10.1016/j.redox.2022.102250 . 10.1016/j.redox.2022.102250 . published Redox Biology
Intra-dimer cooperativity between the active site cysteines during the oxidation of peroxiredoxin 2
Peskin, Alexander V.; Meotti, Flávia C.; de Souza, Luiz F.; Anderson, Robert F.; Winterbourn, Christine C.; Salvador, Armindo, Free Radical Biology and Medicine. 115 - 125. 158. 2020. http://dx.doi.org/10.1016/j.freeradbiomed.2020.07.007 . 10.1016/j.freeradbiomed.2020.07.007 . published Free Radical Biology and Medicine
Mapping the phenotypic repertoire of the cytoplasmic 2-Cys peroxiredoxin – Thioredoxin system. 1. Understanding commonalities and differences among cell types
Selvaggio, Gianluca; Coelho, Pedro M.B.M.; Salvador, Armindo, Redox Biology. 297 - 315. 15. 2018. http://dx.doi.org/10.1016/j.redox.2017.12.008 . 10.1016/j.redox.2017.12.008 . published Redox Biology
Quantitative Assessment of Methods Used To Obtain Rate Constants from Molecular Dynamics Simulations—Translocation of Cholesterol across Lipid Bilayers
Filipe, Hugo A. L.; Javanainen, Matti; Salvador, Armindo; Galvão, Adelino M.; Vattulainen, Ilpo; Loura, Luís M. S.; Moreno, Maria João, Journal of Chemical Theory and Computation. 3840 - 3848. 7. 14. 2018. http://dx.doi.org/10.1021/acs.jctc.8b00150 . 10.1021/acs.jctc.8b00150 . published Journal of Chemical Theory and Computation
Localized redox relays as a privileged mode of cytoplasmic hydrogen peroxide signaling
Travasso, R.D.M.; Sampaio dos Aidos, F.; Bayani, A.; Abranches, P.; Salvador, A., Redox Biology. 233 - 245. 12. 2017. http://www.scopus.com/inward/record.url?eid=2-s2.0-85014574052&partnerID=MN8TOARS . 10.1016/j.redox.2017.01.003 . published Redox Biology
Mass Isotopomer Analysis of Nucleosides Isolated from RNA and DNA Using GC/MS
Miranda-Santos, Ines; Gramacho, Silvia; Pineiro, Marta; Martinez-Gomez, Karla; Fritz, Michel; Hollemeyer, Klaus; Salvador, Armindo; Heinzle, Elmar, Analytical Chemistry. 617 - 623. 1. 87. 2015. https://doi.org/10.1021/ac503305w . 10.1021/ac503305w . published Analytical Chemistry
Hydrogen peroxide metabolism and sensing in human erythrocytes: A validated kinetic model and reappraisal of the role of peroxiredoxin II
Benfeitas, R.; Selvaggio, G.; Antunes, F.; Coelho, P.M.B.M.; Salvador, A., Free Radical Biology and Medicine. 35 - 49. 74. 2014. http://www.scopus.com/inward/record.url?eid=2-s2.0-84904329372&partnerID=MN8TOARS . 10.1016/j.freeradbiomed.2014.06.007 . published Free Radical Biology and Medicine
Homeostasis of free cholesterol in the blood: A preliminary evaluation and modeling of its passive transport
Estronca, L.M.B.B.; Filipe, H.A.L.; Salvador, A.; Moreno, M.J.; Vaz, W.L.C., Journal of Lipid Research. 1033 - 1043. 6. 55. 2014. http://www.scopus.com/inward/record.url?eid=2-s2.0-84901660412&partnerID=MN8TOARS . 10.1194/jlr.M043067 . published Journal of Lipid Research
Beyond Overton's Rule: Quantitative Modeling of Passive Permeation through Tight Cell Monolayers
Filipe, H. A. L.; Salvador, A.; Silvestre, J. M.; Vaz, W. L. C.; Moreno, M. J., Molecular Pharmaceutics. 3696 - 3706. 10. 11. 2014. http://dx.doi.org/10.1021/mp500437e . 10.1021/mp500437e . published Molecular Pharmaceutics
Relating mutant genotype to phenotype via quantitative behavior of the NADPH redox cycle in human erythrocytes
Coelho, P.M.B.M.; Salvador, A.; Savageau, M.A., PLoS ONE. 9. 5. 2010. http://www.scopus.com/inward/record.url?eid=2-s2.0-77958545833&partnerID=MN8TOARS . 10.1371/journal.pone.0013031 . published PLoS ONE
Quantifying global tolerance of biochemical systems: Design implications for moiety-transfer cycles
Coelho, P.M.B.M.; Salvador, A.; Savageau, M.A., PLoS Computational Biology. 3. 5. 2009. http://www.scopus.com/inward/record.url?eid=2-s2.0-63549119474&partnerID=MN8TOARS . 10.1371/journal.pcbi.1000319 . published PLoS Computational Biology
Phenotypes and tolerances in the design space of biochemical systems
Savageau, M.A.; Coelho, P.M.B.M.; Fasani, R.A.; Tolla, D.A.; Salvador, A., Proceedings of the National Academy of Sciences of the United States of America. 6435 - 6440. 16. 106. 2009. http://www.scopus.com/inward/record.url?eid=2-s2.0-66149108427&partnerID=MN8TOARS . 10.1073/pnas.0809869106 . published Proceedings of the National Academy of Sciences of the United States of America
Why does superoxide dismutase overexpression often increase hydrogen peroxide concentrations? An alternative explanation
Gardner, R.; Moradas-Ferreira, P.; Salvador, A., Journal of Theoretical Biology. 798 - 800. 3. 242. 2006. http://www.scopus.com/inward/record.url?eid=2-s2.0-33747879504&partnerID=MN8TOARS . 10.1016/j.jtbi.2006.04.007 . published Journal of Theoretical Biology
Tools for kinetic modeling of biochemical networks
Alves, R.; Antunes, F.; Salvador, A., Nature Biotechnology. 667 - 672. 6. 24. 2006. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745075591&partnerID=MN8TOARS . 10.1038/nbt0606-667 . published Nature Biotechnology
Evolution of enzymes in a series is driven by dissimilar functional demands
Salvador, A.; Savageau, M.A., Proceedings of the National Academy of Sciences of the United States of America. 2226 - 2231. 7. 103. 2006. http://www.scopus.com/inward/record.url?eid=2-s2.0-33144458377&partnerID=MN8TOARS . 10.1073/pnas.0510776103 . published Proceedings of the National Academy of Sciences of the United States of America
Quantitative evolutionary design of glucose 6-phosphate dehydrogenase expression in human erythrocytes
Salvador, A.; Savageau, M.A., Proceedings of the National Academy of Sciences of the United States of America. 14463 - 14468. SUPPL. 2. 100. 2003. http://www.scopus.com/inward/record.url?eid=2-s2.0-0345060788&partnerID=MN8TOARS . 10.1073/pnas.2335687100 . published Proceedings of the National Academy of Sciences of the United States of America
Why does SOD overexpression sometimes enhance, sometimes decrease, hydrogen peroxide production? A minimalist explanation
Gardner, R.; Salvador, A.; Moradas-Ferreira, P., Free Radical Biology and Medicine. 1351 - 1357. 12. 32. 2002. http://www.scopus.com/inward/record.url?eid=2-s2.0-0037096203&partnerID=MN8TOARS . 10.1016/S0891-5849(02)00861-4 . published Free Radical Biology and Medicine
Hydroperoxyl, superoxide and pH gradients in the mitochondrial matrix: A theoretical assessment
Salvador, A.; Sousa, J.; Pinto, R.E., Free Radical Biology and Medicine. 1208 - 1215. 10. 31. 2001. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035890104&partnerID=MN8TOARS . 10.1016/S0891-5849(01)00707-9 . published Free Radical Biology and Medicine
Synergism analysis of biochemical systems. I. Conceptual framework
Salvador, A., Mathematical Biosciences. 105 - 129. 2. 163. 2000. 10.1016/s0025-5564(99)00056-5 . published Mathematical Biosciences
Synergism analysis of biochemical systems. II. Tensor formulation and treatment of stoichiometric constraints
Salvador, A., Mathematical Biosciences. 131 - 158. 2. 163. 2000. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034092624&partnerID=MN8TOARS . 10.1016/S0025-5564(99)00057-7 . published Mathematical Biosciences
Lipid peroxidation in mitochondrial inner membranes. I. An integrative kinetic model
Antunes, F.; Salvador, A.; Marinho, H.S.; Alves, R.; Pinto, R.E., Free Radical Biology and Medicine. 917 - 943. 7. 21. 1996. http://www.scopus.com/inward/record.url?eid=2-s2.0-0029908304&partnerID=MN8TOARS . 10.1016/S0891-5849(96)00185-2 . published Free Radical Biology and Medicine
Kinetic modelling of in vitro lipid peroxidation experiments--'low level' validation of a model of in vivo lipid peroxidation.
Salvador, A.; Antunes, F.; Pinto, R.E., Free radical research. 151 - 172. 2. 23. 1995. http://www.scopus.com/inward/record.url?eid=2-s2.0-0029355440&partnerID=MN8TOARS . 10.3109/10715769509064029 . published Free radical research
PHGPx and phospholipase A2/GPx: Comparative importance on the reduction of hydroperoxides in rat liver mitochondria
Antunes, F.; Salvador, A.; Pinto, R.E., Free Radical Biology and Medicine. 669 - 677. 5. 19. 1995. http://www.scopus.com/inward/record.url?eid=2-s2.0-0028991435&partnerID=MN8TOARS . 10.1016/0891-5849(95)00040-5 . published Free Radical Biology and Medicine
5 32 out of 32 Publications
All projects
Information of exclusive responsibility of the researcher 01-12-2024 , from platform CIÊNCIAVITAE.
2016/07 - 2019/06
Unraveling the rules of passive permeation through the bloodbrain barrier
PTDC/DTP-FTO/ 2784/2014
Supervisor
Universidade de Coimbra Centro de Química de Coimbra; Universidade de Coimbra Centro de Neurociências e Biologia Celular
Funders: Fundação para a Ciência e a Tecnologia, I.P.
2016/07 - 2019/06
Relationship between adenosine and chromosomal instability: a new perspective to understand the oncogenic mechanism in glioblastoma
PTDC/BIM-ONC/ 7121/2014
Supervisor
Universidade de Coimbra Centro de Neurociências e Biologia Celular
Funders: Fundação para a Ciência e a Tecnologia, I.P.
2012/04 - 2015/09
Finding the naturally evolved design principles of prevalent metabolic circuits
Provided by PTCRIS: 119657
Principal investigator
Universidade de Coimbra Centro de Neurociências e Biologia Celular; Universidade de Coimbra Faculdade de Ciencias e Tecnologia; Universidade do Minho
Funders: Fundação para a Ciência e a Tecnologia, I.P.
2011/01/01 - 2012/12/31
Strategic Project - LA 1 - 2011-2012
PEst-C/SAU/LA0001/2011
Universidade de Coimbra Centro de Neurociências e Biologia Celular
Funders: Fundação para a Ciência e a Tecnologia
2010/02 - 2013/02
Derivative-Free Optimization: Future Challenges and New Applications
Provided by PTCRIS: 98214
Supervisor
Funders: Fundação para a Ciência e a Tecnologia, I.P.
2008/01 - 2011/12
Reconstruction and systems analysis of the reaction networks of reactive oxygen, nitrogen and sulfur species in representative physiological systems
Provided by PTCRIS: 70523
Principal investigator
Funders: Fundação para a Ciência e a Tecnologia, I.P.
2007/07 - 2010/09
Quantitative Modeling of Passive Trancytotic Diffusion of Amphiphilic Molecules Across the Blood-Brain Barrier
Provided by PTCRIS: 69072
Supervisor
Universidade de Coimbra Centro de Química de Coimbra; Universidade de Coimbra Centro de Neurociências e Biologia Celular
Funders: Fundação para a Ciência e a Tecnologia, I.P.
2007/01/01 - 2008/12/31
Quantitative evolutionary principles in yeast stress response
E6-07
Principal investigator
Conselho de Reitores das Universidades Portuguesas
Funders: Conselho de Reitores das Universidades Portuguesas
5 8 out of 8 projects
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